BCS Team Members

Tim Prangemeier

PhD student

Contact

work +49 6151 16-20 886
fax +49 6151 16-57 241

Work B2/05 112
Schnittspahnstraße 12
64287 Darmstadt

Additional contact information

Additional contact information for the Bio-Campus (Schnittspahnstraße 10)

  • Modelling Lab (B1|08): +49 6151 16 20886
  • Wet Lab (B2|03): +49 6151 16 57 244
  • Microscope Lab (B2|03): +49 6151 16 57 57 245

Tim studied mechanical and process engineering at the Technische Universität Darmstadt and joined the BCS group in 2017. His background is in fluid mechanics and metrology, originally in the wind tunnel and in-flight measurement setting. Having previously investigated bioinspired unsteady aerodynamics, self-organising systems and microfluidic metrology, Tim has transitioned to microfluidics and experimental design. While he is still interested in fundamental fluid mechanical questions, he is working on novel microfluidic components and optimized experimental design within the framework of the LOEWE CompuGene research program (project B-2).

Research and interests

Tim's research interests are focused around developing metrology for single-cell measurements. He is especially interested in optimal-experimental design with both automated measurements and system perturbation methods. This requires the development of novel microfluidic components, automated image processing tools, mathematical modelling, as well as addressing wet lab questions such as controlling organism culture conditions.

Student projects are available in a range of different fields corresponding to the diverse research interests. Topics range from IT, over classical engineering projects to biological investigations. A list of potential topics offered at BCS can be found here.

Publications

Current Student Projects

Christoph Reich
(Research Assistant)
GANs for Cell-Trap Configurations; CNN applications in Bio-Imaging

Completed Student Projects

Berkay Canel
(Master Thesis)
MS Lesion Segmentation on MRI Imagery 12/2020
Christian Schade
(Master Thesis)
CNNs for microscope focal plane classification 11/2020
Christoph Reich
(Bachelor Thesis)
Generative Adversial Networks for Cell-Trap Configurations; CNN applications in Bio-Imaging 10/2020
Ziheng Wang
(Master Thesis)
Benchmarking Live Cell Imaging Techniques 12/2019
André Françani
(Master Thesis)
Cell Segmentation Performance of CNNs 12/2019
Yujue Wang
(Master Thesis)
Trasnfer Learning Strategies for CNNs in the Laboratory 11/2019
Christoph Reich
(Pro, and Project Semianr)
CNN Segmetnaiton Applications in Biological Research 10/2019
Jan Basrawi
(Master Thesis)
Feasibility of Robust Cell Segmentaiton with CNNs 06/2019
Patrick Kitzing
(Bachelor Thesis)
Numerical Simulation of Microfluidic Cell Trapping 07/2018
Elisa Fernandez
(Bachelor Thesis)
Cell Segmentation with Support 04/2018
IT Project Group Image Processing Pipeline 10/2017
IT Project Group Automation of Experimental Setup 10/2017
Gabriela Santos de Souza
(Master Thesis)
Image Processing: Segmentation of Trapped Single Cells 04/2017
Archit Aggarwal
(Bachelor Thesis)
Image Processing: Trap Pattern Detection
(Electrical Engnieering)
07/2016
Yurii Toma
(Bachelor Thesis)
Image Processing: Trap Pattern Detection
(IT and Mathematics)
04/2016

Co-Supervised Students and Research Assistants

  • Florian Swienty (Bachelor Thesis, Physics, teaching assistant)
  • Sarah Riesbeck (wet lab, research assistant)
  • André Françani (imaging, research assistant)
  • Florian Schwald (teaching assistant)

Possible student projects

Possible student projects you can find here.

Additional contact information for the Bio-Campus (Schnittspahnstraße 10)

  • Modelling Lab (B1|08): +49 6151 16 20886
  • Wet Lab (B2|03): +49 6151 16 57 244
  • Microscope Lab (B2|03): +49 6151 16 57 57 245